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Faculty Research Profiles

James Glazier

Faculty Title

Adjunct Professor of Informatics

My work has focused on the formation of complex patterns through nonlinear interactions. Such patterning occurs throught the living and non-living natural world. I have studied patterning in chaotic and turbulent fluids, soap froths, DNA sequences, the brain and developing embryos. The list of publications below provides some entree into these diverse areas.

 

Selected Publications:

     

  1. “Dynamics of the Two-Dimensional Soap Froth,” James A. Glazier, S. P. Gross, and Joel Stavans, Physical Review A 36, 306 (1987).
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  2. “Quasiperiodicity and Dynamical Systems: An Experimentalists's View,” James A. Glazier and Albert Libchaber, IEEE Transactions on Circuits and Systems 35, 790 (1988). Reprinted in Hao Bai-Lin, Chaos II, (World Scientific, 1990), 299.
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  3. “Coarsening in the Two-Dimensional Soap Froth and the Large-Q Potts Model: A Detailed Comparison,” James A. Glazier, Michael P. Anderson and Gary S. Grest, Philosophical Magazine B 62, 615 (1990).
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  4. “Effects of Lattice Anisotropy and Temperature on Domain Growth in the Two-Dimensional Potts Model,” Elizabeth A. Holm, James A. Glazier, David J. Srolovitz, and Gary S. Grest, Physical Review A 43, 2662 (1991).
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  5. “The Kinetics of Cellular Patterns,” James A. Glazier and Denis Weaire, Journal of Physics: Condensed Matter 4, 1867 (1992).
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  6. “Global Fractal Dimension of Human DNA Sequences Treated as Pseudorandom Walks,” C. Berthelsen, James A. Glazier, and Mark H. Skolnick, Physical Review A 45, 8902-8913 (1992).
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  7. “Simulation of the Differential Adhesion Driven Rearrangement of Biological Cells,” James A. Glazier and FranÃ���Ã�¯Ã�¿Ã�½Ã���Ã��Ã�§ois Graner, Physical Review E 47, 2128-2154 (1993).
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  8. “Grain Growth in Three Dimensions Depends on Grain Topology,” James A. Glazier, Physical Review Letters 70, 2170-2173 (1993).
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  9. “Reconstructing Phylogeny from the Multifractal Spectrum of Mitochondrial DNA Sequences,” James A. Glazier, Sridhar Raghavachari, Cheryl L. Berthelsen, and Mark H. Skolnick, Physical Review E 51, 2665-2668 (1995).
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  10. “Spatially Coherent States in Fractally Coupled Map Lattices,” Sridhar Raghavachari and James A. Glazier, Physical Review Letters 74, 3297-3300 (1995).
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  11. “Hysteresis and Avalanches in Two-Dimensional Foam Rheology Simulations,” Yi Jiang, Pieter J. Swart, Avadh Saxena, M. Asipauskas and James A. Glazier, Physical Review E 59, 5819-5832 (1999).
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  12. “Waves in Diffusively Coupled Bursting Cells,” Sridhar Raghavachari and James A. Glazier, Physical Review Letters 82, 2991-2994 (1999).
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  13. “Evidence against "Ultrahard" Thermal Turbulence at Very High Rayleigh Numbers,” James A. Glazier, Takehiko Segawa, Antoine Naert and Masaki Sano, Nature 398, 307-310 (1999).
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  14. “Model of Convergent Extension in Animal Morphogenesis,” Mark Zajac, Gerald L. Jones, and James A. Glazier, Physical Review Letters 85, 2022-2025 (2000).
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  15. “A Texture Tensor to Qualify Deformations,” Miguel Aubouy, Yi Jiang, James A. Glazier, and Francois Granner, Granular Matter 5, 67-70 (2003).
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  16. “A Texture Tensor to Qualify Deformations: The Example of Two-Dimensional Flowing Foams,” Marius Asipauskas, Miguel Aubouy, James A. Glazier, Francois Granner and Yi Jiang, Granular Matter 5, 71-74 (2003).
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  17. “CompuCell, a Multi-model Framework for Simulation of Morphogenesis,” J. A. Izaguirre, R. Chaturvedi, C. Huang, T. Cickovski, J. Coffland, G. Thomas, G. Forgacs, M. Alber, G. Hentschel, S. A. Newman and J. A. Glazier, Bioinformatics 20, 1129-1137 (2004).
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  18. “Non-Turing Stripes and Spots: A Novel Mechanism for Biological Cell Clustering,” Wei Zeng, Gilberto L. Thomas and James A. Glazier, Physica A 341, 482-494.
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  19. “Simulating Convergent Extension by Way of Anisotropic Differential Adhesion,” Zajac M, Jones GL, and Glazier JA, Journal of Theoretical Biology 222 (2), 247-259 (May 21 2003).
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  20. “A Cell-centered Approach to Developmental Biology,” Roeland H. M. Merks and James A. Glazier, Physica A 352, 113-130 (2005).

     

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  21. “On Multiscale Approaches to Three-dimensional Modeling of Morphogenesis,” Rajiv Chaturvedi, ChengBang Huang, Bogdan Kazmierczak, Terry Schneider, Jesus A. Izaguirre, Tilmann Glimm, H. George E. Hentschel, James A. Glazier, Stuart A. Newman, Mark S. Alber, Journal of the Royal Society Interface 2, 237-253 (2005).

     

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  22. “A Framework for Three-Dimensional Simulation of Morphogenesis,” Trevor M. Cickovski, Chengbang Huang, Rajiv Chaturvedi, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, and Jesus A. Izaguirre, IEEE/ACM Transactions on Computational Biology and Bioinformatics 2, 1-16 (2005).

     

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  23. “Solving the Advection-diffusion Equations in Biological Contexts Using the Cellular Potts Model,” Debasis Dan, Christopher Mueller, Kun Chen, and James A. Glazier, Physical Review E 72, 041909 (2005).

     

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  24. “Dynamic Mechanisms of Blood Vessel Growth,” Roeland MH Merks and James A. Glazier, Nonlinearity 19, C1-C10 (2006).

     

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  25. “Cell Elongation Is Key to in silico Replication of in vitro Vasculogenesis and Subsequent Remodeling,” Roeland M.H. Merks, Sergey V. Brodsky, Michael S. Goligorksy, Stuart A. Newman and James A. Glazier, Developmental Biology 289, 44-54 (2006).

     

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  26. “Cell movement during chick primitive streak formation,” Manli Chuai, Wei Zeng, Xuesong Yang, Veromka Boychenko, James A. Glazier, Cornelis J. Weijer, Developmental Biology 296: 137-149 (2006).

     

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  27. “Analysis of tissue flow patterns during primitive streak formation in the chick embryo,” Cheng Cui, Xuesong Yang, ManLi Chuai, James A. Glazier, Corneljis J. Weijer, Developmental Biology 284, 37-47 (2005).

     

    More Information - PDF (2.29 MB) - PS (4.31 MB)
     

     

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James Glazier

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